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8DB1

Crystal structure of native DMATS1 prenyltransferase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-18
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)1
Spacegroup nameP 21 21 21
Unit cell lengths89.644, 107.211, 178.984
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution91.970 - 2.720
R-factor0.2215
Rwork0.220
R-free0.24660
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Alphafold
RMSD bond length0.006
RMSD bond angle0.987
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]91.9702.820
High resolution limit [Å]2.7202.720
Rmerge0.1471.290
Rpim0.0620.561
Number of reflections469964548
<I/σ(I)>101.6
Completeness [%]99.799.8
Redundancy6.66.3
CC(1/2)0.9950.514
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82947.5 mg/mL protein, 0.1 M Tris-HCl (pH 8.0), 0.7 M NaCl, 24% (v/v) PEG 3350

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