8DAY
Crystal Structure of DMATS1 prenyltransferase in complex with L-Tyr and DMSPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-18 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 90.066, 107.717, 180.722 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 92.530 - 2.550 |
R-factor | 0.2162 |
Rwork | 0.215 |
R-free | 0.25060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold |
RMSD bond length | 0.004 |
RMSD bond angle | 0.780 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 107.700 | 2.620 |
High resolution limit [Å] | 2.550 | 2.550 |
Rmerge | 0.086 | 1.339 |
Rpim | 0.036 | 0.597 |
Number of reflections | 57998 | 4450 |
<I/σ(I)> | 13.2 | 1.4 |
Completeness [%] | 99.8 | 100 |
Redundancy | 6.6 | |
CC(1/2) | 0.999 | 0.565 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.9 | 294 | 7.5 mg/mL protein, 0.1 M Tris-HCl (pH 8.9), 0.6 M NaCl, 23% (v/v) PEG 3,350 |