8D8P
Crystal structure of a novel fatty acid decarboxylase from Rothia nasimurium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS SIRUS BEAMLINE MANACA |
Synchrotron site | LNLS SIRUS |
Beamline | MANACA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.4586 |
Spacegroup name | F 2 2 2 |
Unit cell lengths | 57.545, 203.380, 316.351 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.410 - 2.750 |
R-factor | 0.2301 |
Rwork | 0.228 |
R-free | 0.26920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1izo |
RMSD bond length | 0.005 |
RMSD bond angle | 0.831 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.020 | 2.920 |
High resolution limit [Å] | 2.750 | 2.750 |
Rmeas | 0.350 | |
Number of reflections | 24500 | 3873 |
<I/σ(I)> | 5.9 | 0.98 |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 5.9 | |
CC(1/2) | 0.980 | 0.500 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 25 % (w/v) PEG3500, 15% (w/v) 2-Methil-2,4-pentanediol, 0.1 M Imidazole (pH 6.5) and 0.2 M lithium sulfate |