8D6C
Crystal Structure of Human Myt1 Kinase domain Bounded with compound 28
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979100 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.640, 112.730, 72.660 |
Unit cell angles | 90.00, 110.42, 90.00 |
Refinement procedure
Resolution | 58.290 - 2.200 |
R-factor | 0.2426 |
Rwork | 0.241 |
R-free | 0.26740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3p1a |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 58.290 | 58.290 | 2.330 |
High resolution limit [Å] | 2.190 | 6.550 | 2.190 |
Rmerge | 0.071 | 0.053 | 1.600 |
Rmeas | 0.084 | 0.063 | 1.877 |
Total number of observations | 138123 | ||
Number of reflections | 39393 | 1503 | 6259 |
<I/σ(I)> | 7.38 | 22.14 | 0.55 |
Completeness [%] | 98.7 | 97.5 | 97.4 |
Redundancy | 3.506 | 3.328 | 3.573 |
CC(1/2) | 0.996 | 0.994 | 0.554 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.25 | 293 | 5.6 to 6.6 % PEG3350, 0.2 M Na2SO4, 0.1 M Tris-HCl and 10% EG |