8D27
Arginase Domain of Ornithine Decarboxylase/Arginase from Fusobacterium nucleatum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-08-31 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.818, 78.217, 73.530 |
Unit cell angles | 90.00, 90.03, 90.00 |
Refinement procedure
Resolution | 44.820 - 2.250 |
R-factor | 0.1944 |
Rwork | 0.180 |
R-free | 0.21230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold2 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.2-4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.290 |
High resolution limit [Å] | 2.250 | 6.100 | 2.250 |
Rmerge | 0.146 | 0.075 | 0.488 |
Rmeas | 0.171 | 0.087 | 0.587 |
Rpim | 0.089 | 0.045 | 0.323 |
Total number of observations | 81549 | ||
Number of reflections | 23357 | 1223 | 998 |
<I/σ(I)> | 6 | ||
Completeness [%] | 97.4 | 99 | 83.8 |
Redundancy | 3.5 | 3.7 | 2.9 |
CC(1/2) | 0.988 | 0.663 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 298 | 0.07 M sodium acetate pH 4.6, 12% PEG 4000 and 25% glycerol |