8D01
The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 260.367, 45.151, 84.610 |
Unit cell angles | 90.00, 98.61, 90.00 |
Refinement procedure
Resolution | 47.680 - 2.460 |
R-factor | 0.1911 |
Rwork | 0.189 |
R-free | 0.22890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | F105 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.537 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.460 | 6.780 | 2.500 |
Rmerge | 0.346 | 0.129 | 1.671 |
Rmeas | 0.379 | 0.141 | 1.836 |
Rpim | 0.151 | 0.056 | 0.752 |
Number of reflections | 34904 | 1864 | 1698 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 99.9 | 99.8 | 99.9 |
Redundancy | 6.1 | 6 | 5.8 |
CC(1/2) | 0.987 | 0.349 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.237M potassium thiocyanate, 10 %(w/v) polyethylene glycol 3350 |