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8D00

Structure of the Arabidopsis thaliana SPIRAL2 TOG domain

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-09
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.00000
Spacegroup nameI 2 2 2
Unit cell lengths72.843, 78.456, 131.938
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.360 - 2.800
R-factor0.2184
Rwork0.214
R-free0.25900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)AlphaFold prediction
RMSD bond length0.003
RMSD bond angle0.535
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.900
High resolution limit [Å]2.8002.800
Number of reflections9490944
<I/σ(I)>19.72.6
Completeness [%]98.7
Redundancy11.5
CC(1/2)0.9930.872
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2932 ul 15.7 mg/mL SPIRAL2 TOG domain (residues 33-333) protein + 2 ul of a 1 ml well solution (27.5% w/v PEG3350, 150 mM ammonium phosphate, 280 mM sodium iodide)

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