8D00
Structure of the Arabidopsis thaliana SPIRAL2 TOG domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 72.843, 78.456, 131.938 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.360 - 2.800 |
R-factor | 0.2184 |
Rwork | 0.214 |
R-free | 0.25900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold prediction |
RMSD bond length | 0.003 |
RMSD bond angle | 0.535 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Number of reflections | 9490 | 944 |
<I/σ(I)> | 19.7 | 2.6 |
Completeness [%] | 98.7 | |
Redundancy | 11.5 | |
CC(1/2) | 0.993 | 0.872 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 2 ul 15.7 mg/mL SPIRAL2 TOG domain (residues 33-333) protein + 2 ul of a 1 ml well solution (27.5% w/v PEG3350, 150 mM ammonium phosphate, 280 mM sodium iodide) |