8CPQ
Crystal structure of human protein disulfide isomerase PDIA6 domain b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00003 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 57.384, 96.855, 63.321 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.370 - 1.800 |
R-factor | 0.1779 |
Rwork | 0.176 |
R-free | 0.21150 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.721 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.12) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.370 | 1.860 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.193 | 1.893 |
Rmeas | 0.203 | 1.995 |
Rpim | 0.062 | 0.623 |
Number of reflections | 16704 | 1638 |
<I/σ(I)> | 10.5 | 1.4 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 10.2 | 10 |
CC(1/2) | 0.998 | 0.637 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.9M (NH4)2SO4, 0.1M Hepes 7.0, 1% DMSO |