8CO2
YdaS N-terminal domain from prophage CP-933P in E. coli O157:H7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 31 |
Unit cell lengths | 42.710, 42.710, 65.090 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.988 - 1.639 |
R-factor | 0.214110437676 |
Rwork | 0.212 |
R-free | 0.25764 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.744 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.988 | 1.750 |
High resolution limit [Å] | 1.639 | 1.639 |
Rmerge | 0.040 | 1.135 |
Number of reflections | 16212 | 2549 |
<I/σ(I)> | 23.81 | 1.46 |
Completeness [%] | 99.4 | 99.5 |
Redundancy | 10.44 | 10.1 |
CC(1/2) | 0.999 | 0.668 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 293 | 0.024 M 1,6-Hexanediol, 0.024 M 1-Butanol, 0.024 M 1,2-Propanediol, 0.024 M 2-Propanol 0.024 M 1,3-Propanediol, 0.05 M Sodium HEPES, 0.05 M MOPS, 9.375% v/v MPD; 9.375% PEG 1000; 9.375% w/v PEG 3350 |