8CKG
Semaphorin-5A TSR 3-4 domains in complex with sulfate
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I24 |
| Synchrotron site | Diamond |
| Beamline | I24 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-01-26 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.9686 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 105.081, 29.286, 90.429 |
| Unit cell angles | 90.00, 100.46, 90.00 |
Refinement procedure
| Resolution | 51.670 - 1.714 |
| R-factor | 0.2072 |
| Rwork | 0.206 |
| R-free | 0.23120 |
| Structure solution method | SAD |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.872 |
| Data reduction software | XDS (20200417) |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | CRANK2 |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 88.925 | 2.380 | 1.855 |
| High resolution limit [Å] | 1.714 | 2.300 | 1.714 |
| Rmerge | 0.096 | 3.673 | 1.200 |
| Rmeas | 3.769 | ||
| Rpim | 0.041 | 0.807 | 0.700 |
| Number of reflections | 20985 | 854 | 1050 |
| <I/σ(I)> | 9.3 | 0.8 | 1 |
| Completeness [%] | 70.7 | 71.8 | 16.9 |
| Redundancy | 6.2 | 19.9 | 3.7 |
| CC(1/2) | 0.995 | 0.561 | 0.338 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 30% PEG 4000, 0.2 M lithium sulfate, 0.1 M Tris |
| 2 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 30% PEG 4000, 0.2 M lithium sulfate, 0.1 M Tris |
