8C8U
Priestia megaterium mupirocin-resistant isoleucyl-tRNA synthetase 2 complexed with mupirocin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-02 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9999951402559115 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 89.580, 124.830, 114.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.230 - 1.901 |
R-factor | 0.1846 |
Rwork | 0.183 |
R-free | 0.22240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1jzs |
RMSD bond length | 0.008 |
RMSD bond angle | 0.909 |
Data reduction software | XDS (20190806) |
Data scaling software | XSCALE (20190806) |
Phasing software | PHASER (CCP4Interface 7.0.077) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.230 | 1.969 |
High resolution limit [Å] | 1.901 | 1.901 |
Rmerge | 0.130 | 2.579 |
Rmeas | 0.135 | 2.681 |
Rpim | 0.037 | 0.720 |
Number of reflections | 101302 | 7452 |
<I/σ(I)> | 14.93 | 1.01 |
Completeness [%] | 90.6 | 74.27 |
Redundancy | 13.3 | 13.4 |
CC(1/2) | 0.999 | 0.452 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1-0.4 M Potassium tartrate 15-25 % (w/v) PEG3350 12.5 mM Hepes-KOH pH=7,5 at 20 oC 25 mM NaCl 5 mM lithium-mupirocin 8.25 mg/ml wt-HVGH-BmIleRS2 |