8C1T
Crystal structure of Trichoplax Dlg PDZ1 domain in complex with Trichoplax Vangl peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 1 |
Unit cell lengths | 34.696, 47.953, 50.830 |
Unit cell angles | 85.25, 72.08, 69.17 |
Refinement procedure
Resolution | 33.360 - 2.200 |
R-factor | 0.2141 |
Rwork | 0.211 |
R-free | 0.26430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rl7 |
RMSD bond length | 0.010 |
RMSD bond angle | 0.948 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.800 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Number of reflections | 14440 | 1247 |
<I/σ(I)> | 7.7 | |
Completeness [%] | 97.7 | |
Redundancy | 3.6 | |
CC(1/2) | 0.992 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 2.2 M sodium malonate dibasic monohydrate, pH 6.1 , 20% glucose |