8BOJ
Crystal structure of Trichoplax Scribble PDZ1 domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.067, 49.016, 68.873 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.930 - 1.500 |
R-factor | 0.1829 |
Rwork | 0.181 |
R-free | 0.20940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vwc |
RMSD bond length | 0.004 |
RMSD bond angle | 0.710 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.020 | 1.530 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.105 | 0.906 |
Number of reflections | 13564 | 657 |
<I/σ(I)> | 16 | 3.8 |
Completeness [%] | 99.1 | |
Redundancy | 13 | |
CC(1/2) | 0.999 | 0.906 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 1.4 M sodium citrate, pH 5.7 |