8BOD
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with Compound 20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 32.720, 107.250, 40.550 |
Unit cell angles | 90.00, 108.73, 90.00 |
Refinement procedure
Resolution | 38.400 - 1.500 |
R-factor | 0.1616 |
Rwork | 0.160 |
R-free | 0.18540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6q7d |
RMSD bond length | 0.005 |
RMSD bond angle | 0.915 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.410 | 1.590 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmeas | 0.014 | 0.130 |
Number of reflections | 42245 | 6717 |
<I/σ(I)> | 8.48 | 1.36 |
Completeness [%] | 99.6 | |
Redundancy | 6.82 | |
CC(1/2) | 0.990 | 0.580 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 291 | 37,5 % Precipitant Mix 4 (25% (v/v) Hexylene glycol, 25% (w/v) Poly(ethylene glycol) 1000, 25% (w/v) Poly(ethylene glycol) 3350), 0.1M Mes pH 6.0, 0.1 M Amino acids mix (0.2 M DL-Alanine, 0.2M DL-Glutamic acid monohydrate, 0.2M DL-Lysine monohydrochloride, 0.2M DL-Serine, 0.2M Glycine) |