8BNV
Crystal structure of Pif1 from Deferribacter desulfuricans in apo from
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978480 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 88.764, 147.053, 78.368 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.640 - 2.860 |
R-factor | 0.2046 |
Rwork | 0.202 |
R-free | 0.24760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ftd |
RMSD bond length | 0.007 |
RMSD bond angle | 0.948 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.993 | 2.910 |
High resolution limit [Å] | 2.860 | 2.860 |
Rmerge | 0.093 | 0.777 |
Rmeas | 0.101 | 0.842 |
Rpim | 0.040 | 0.321 |
Number of reflections | 12146 | 595 |
<I/σ(I)> | 14.5 | 2.3 |
Completeness [%] | 99.7 | 100 |
Redundancy | 6.4 | 6.8 |
CC(1/2) | 0.997 | 0.872 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | Tris-HCl 100 mM PEG 8K 12% Isopropanol 5% |