8BDW
Crystal structure of CnaB2 domain from Lactobacillus plantarum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-24 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9802 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 120.060, 120.060, 230.915 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 104.000 - 1.860 |
Rwork | 0.154 |
R-free | 0.18700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Homology model built with SwissModel using 3PHS as starting model |
RMSD bond length | 0.020 |
RMSD bond angle | 1.458 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (V1.18RC4-3812-000) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.000 | 1.930 |
High resolution limit [Å] | 1.863 | 1.863 |
Rmerge | 0.077 | 0.848 |
Rmeas | 0.081 | 0.947 |
Rpim | 0.026 | 0.405 |
Number of reflections | 158616 | 13576 |
<I/σ(I)> | 17.85 | 1.18 |
Completeness [%] | 98.5 | 85.01 |
Redundancy | 9.4 | 4.5 |
CC(1/2) | 0.999 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 292.15 | 1.5 M ammoniumsulfate, 0.1 M Tris-HCl pH 8.5 |