8BBU
Crystal structure of medical leech destabilase (high salt)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-09 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97242 |
Spacegroup name | P 1 |
Unit cell lengths | 27.440, 36.170, 61.390 |
Unit cell angles | 106.81, 92.58, 95.49 |
Refinement procedure
Resolution | 34.430 - 1.100 |
R-factor | 0.1255 |
Rwork | 0.125 |
R-free | 0.15540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dqa |
RMSD bond length | 0.008 |
RMSD bond angle | 1.167 |
Data reduction software | XDS (20161205) |
Data scaling software | XSCALE (20191015) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18_3855) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.430 | 34.430 | 1.130 |
High resolution limit [Å] | 1.100 | 4.920 | 1.100 |
Rmeas | 0.079 | 0.038 | 0.719 |
Number of reflections | 82406 | 1012 | 5673 |
<I/σ(I)> | 9.22 | 35.05 | 1.65 |
Completeness [%] | 90.5 | 99.2 | 84.7 |
Redundancy | 3.6 | 3.9 | 3.6 |
CC(1/2) | 0.998 | 0.998 | 0.688 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 293 | 2.9 M sodium malonate, 6.4 mM NNN-triacetylchitotriose |