8BAL
Niako3494, a bacterial protein structure in glycoside hydrolase family 20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-29 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 146.987, 254.589, 139.580 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 73.490 - 2.270 |
Rwork | 0.283 |
R-free | 0.35610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Alphafold |
RMSD bond length | 0.007 |
RMSD bond angle | 1.613 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.490 | 2.310 |
High resolution limit [Å] | 2.270 | 2.270 |
Number of reflections | 120442 | 5852 |
<I/σ(I)> | 6.3 | 1.1 |
Completeness [%] | 99.9 | 99.1 |
Redundancy | 13.9 | 13.6 |
CC(1/2) | 0.958 | 0.336 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Protein stock at 18mg/mL, in the precipitant: 0.1 M MMT buffer (DL-Malic acid, MES monohydrate, Tris base [ratio 1:2:2]), pH 6.0, 25 % w/v PEG 1500, protein to precipitant ratio 1:1, 1 uL drop size, +50 nL 1:10000 diluted seed stock. Cryoprotectant used was made up with 20% PEG400 in 80% mother liquor. |