8BAG
Copper(II) bound to a non-canonical quadruplex containing the damaged base 8-oxoguanine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-25 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.97624 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 21.990, 58.870, 45.460 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.430 - 1.130 |
R-factor | 0.1528 |
Rwork | 0.152 |
R-free | 0.17240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1mf5 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.756 |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.430 | 1.150 |
High resolution limit [Å] | 1.130 | 1.130 |
Rmerge | 0.070 | 0.964 |
Number of reflections | 11191 | 495 |
<I/σ(I)> | 15.3 | |
Completeness [%] | 97.9 | |
Redundancy | 1 | |
CC(1/2) | 0.999 | 0.756 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.7 | 291 | 2 ul 40 mM sodium cacodylate, 1 ul 80 mM hexammine (III) cobalt, 1 ul 10% MPD, 2 ul 800 mM potassium chloride, ul 30 mM sodium chloride, 2 ul 1 mM DNA |