8B6D
Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070 in complex with UDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976300 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 65.752, 65.752, 329.552 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 82.524 - 2.100 |
Rwork | 0.175 |
R-free | 0.22090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | apo-TaGalU |
RMSD bond length | 0.011 |
RMSD bond angle | 1.855 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 82.530 | 2.180 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.090 | 1.260 |
Rmeas | 0.093 | 1.280 |
Rpim | 0.024 | 0.240 |
Number of reflections | 43788 | 4253 |
<I/σ(I)> | 29.1 | 3.86 |
Completeness [%] | 100.0 | |
Redundancy | 26.4 | 26.9 |
CC(1/2) | 1.000 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.5 | 292.15 | sodium citrate, PEG 3350 |