8B5U
Crystal structure of Quinonoid dihydropteridine reductase from Leishmania donovani
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 66.762, 66.762, 242.920 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.100 - 1.800 |
R-factor | 0.1994 |
Rwork | 0.198 |
R-free | 0.22190 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dir |
RMSD bond length | 0.013 |
RMSD bond angle | 1.737 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.580 | 48.580 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.069 | 0.052 | |
Rmeas | 0.071 | 0.055 | |
Rpim | 0.017 | 0.015 | 0.477 |
Number of reflections | 29308 | 343 | 1760 |
<I/σ(I)> | 21.6 | ||
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 18.8 | 13.9 | 19.5 |
CC(1/2) | 0.998 | 0.993 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 13-18% PEG 8000, 20% Glycerol |