8B31
Crystal structure of UDP-glucose pyrophosphorylase from Thermocrispum agreste DSM 44070
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.086, 78.593, 89.788 |
Unit cell angles | 90.00, 93.89, 90.00 |
Refinement procedure
Resolution | 48.022 - 1.750 |
Rwork | 0.196 |
R-free | 0.22620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3juj |
RMSD bond length | 0.010 |
RMSD bond angle | 1.649 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 89.580 | 1.780 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.059 | 0.866 |
Rmeas | 0.069 | 1.025 |
Rpim | 0.035 | 0.541 |
Number of reflections | 67139 | 3700 |
<I/σ(I)> | 10.5 | 1.3 |
Completeness [%] | 99.8 | 99.7 |
Redundancy | 3.7 | 3.5 |
CC(1/2) | 0.990 | 0.651 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 292.15 | Bis-Tris-Propane, PEG3350, KSCN, Ethylene Glycol |