8B24
Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 3600-seconds post reaction initiation with Na+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-18 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 83.108, 111.068, 105.419 |
Unit cell angles | 90.00, 108.90, 90.00 |
Refinement procedure
Resolution | 99.740 - 4.530 |
R-factor | 0.3275 |
Rwork | 0.326 |
R-free | 0.36060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lzq D_1292125586 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.636 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 99.740 | 5.220 |
High resolution limit [Å] | 4.530 | 4.530 |
Number of reflections | 6063 | 303 |
<I/σ(I)> | 10.1 | |
Completeness [%] | 87.8 | |
Redundancy | 7.2 | |
CC(1/2) | 0.995 | 0.537 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 60 mM Tris-HCl pH 8.0, 26% v/v PEG400, 175 mM KCl, 2.4 mM MgCl2, 2 mM K4PPi, 20 mM NaCl |