8B22
Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 300-seconds post reaction initiation with Na+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-18 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 83.928, 110.626, 106.154 |
Unit cell angles | 90.00, 108.26, 90.00 |
Refinement procedure
Resolution | 79.700 - 3.980 |
R-factor | 0.2357 |
Rwork | 0.233 |
R-free | 0.26530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | D_1292125586 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.590 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.810 | 4.090 |
High resolution limit [Å] | 3.970 | 3.970 |
Number of reflections | 14163 | 708 |
<I/σ(I)> | 6.1 | |
Completeness [%] | 95.7 | |
Redundancy | 6.4 | |
CC(1/2) | 0.975 | 0.837 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 60 mM Tris-HCl pH 8.0, 26% v/v PEG400, 175 mM KCl, 2.4 mM MgCl2, 2 mM K4PPi, 20 mM NaCl |