8B15
A pentameric barrel state of a de novo coiled-coil assembly: CC-Pent2-I10Q
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 31 |
Unit cell lengths | 40.273, 40.273, 162.422 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.900 - 1.900 |
R-factor | 0.215 |
Rwork | 0.213 |
R-free | 0.24680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bas |
RMSD bond length | 0.005 |
RMSD bond angle | 1.015 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.900 | 1.970 |
High resolution limit [Å] | 1.900 | 1.902 |
Rmerge | 0.151 | 1.976 |
Rmeas | 0.159 | 2.075 |
Rpim | 0.048 | 0.629 |
Number of reflections | 23144 | 2286 |
<I/σ(I)> | 7.75 | 0.45 |
Completeness [%] | 99.9 | 99.78 |
Redundancy | 10.6 | 10.7 |
CC(1/2) | 0.998 | 0.349 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 1.5mM peptide, 50 mM Imidazole, 50 mM MES (acid), 30 mM MgCl2, 30 mM CaCl2, with 1,2-Ethanediol EDO_P8K 15.0% v/v, at pH 6.5. |