8AWP
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant 208 (V19I/R23H/M38I/I60F/C106Q)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.710, 53.258, 89.490 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.770 - 1.595 |
R-factor | 0.1932 |
Rwork | 0.192 |
R-free | 0.20850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vj2 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.936 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.770 | 1.652 |
High resolution limit [Å] | 1.595 | 1.595 |
Rmerge | 0.065 | 0.713 |
Rpim | 0.028 | 0.298 |
Number of reflections | 27169 | 2590 |
<I/σ(I)> | 14.1 | 2.33 |
Completeness [%] | 99.4 | 96.23 |
Redundancy | 6.6 | |
CC(1/2) | 0.999 | 0.837 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | 14.2 mg/ml protein concentration 1.6M Sodium citrate tribasic dihydrate pH 6.5 |