8AVI
Crystal structure of IsdG from Bacillus cereus in complex with heme
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.969998 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.703, 48.941, 100.931 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.040 - 2.000 |
R-factor | 0.2024 |
Rwork | 0.201 |
R-free | 0.23900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8avh |
RMSD bond length | 0.008 |
RMSD bond angle | 0.935 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.040 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.065 | 1.213 |
Rmeas | 0.071 | 1.313 |
Rpim | 0.028 | 0.498 |
Number of reflections | 16227 | 1200 |
<I/σ(I)> | 12.2 | 1.6 |
Completeness [%] | 99.7 | 100 |
Redundancy | 6.5 | 6.7 |
CC(1/2) | 0.997 | 0.579 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 18 mg/mL IsdaG (1:1) 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD, 0.02 M 1,6-hexanediol, 0.02 M 1-butanol, 0.02 M (RS)-1,2-propanediol, 0.02 M 2-propanol, 0.02 M 1,4-butanediol, 0.02 M 1,3-propanediol, 0.1 M MOPS/HEPES-Na pH 7.5 |