8APP
AbLys1 endolysin from Acinetobacter baumannii phage AbTZA1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.8266 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.653, 184.777, 57.904 |
Unit cell angles | 90.00, 110.69, 90.00 |
Refinement procedure
Resolution | 40.680 - 1.820 |
R-factor | 0.2126 |
Rwork | 0.211 |
R-free | 0.25240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | AlphaFold model |
RMSD bond length | 0.008 |
RMSD bond angle | 0.940 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.730 | 1.880 |
High resolution limit [Å] | 1.820 | 1.820 |
Rmeas | 0.078 | 1.276 |
Rpim | 0.042 | 0.894 |
Number of reflections | 70067 | 4406 |
<I/σ(I)> | 12.5 | |
Completeness [%] | 96.2 | 61.6 |
Redundancy | 6.6 | 3.2 |
CC(1/2) | 0.999 | 0.424 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 289 | 0.1 M Phosphate/citrate, 0.2 M lithium sulphate, pH 4.2, 20% w/v PEG 1000 |