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8AP2

cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) at 1.39 Angstrom

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP13 (MX1)
Temperature [K]100
Detector technologyPIXEL
Collection date2022-05-10
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9724
Spacegroup nameP 1 21 1
Unit cell lengths88.070, 71.500, 102.780
Unit cell angles90.00, 100.75, 90.00
Refinement procedure
Resolution46.130 - 1.390
R-factor0.1606
Rwork0.159
R-free0.19050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xdc
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.13046.1301.430
High resolution limit [Å]1.3906.2201.390
Rmerge0.1430.0562.549
Rmeas0.1550.0612.777
Total number of observations1678901
Number of reflections251442294218564
<I/σ(I)>8.6429.011
Completeness [%]99.999.599.9
Redundancy6.6776.2666.292
CC(1/2)0.9970.9970.454
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP62770.1M Mes-NaOH (pH6.0), 19% PEG4000, 21% glycerol, 0.4M MgCl2

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PDB entries from 2025-06-11

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