8AP2
cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) at 1.39 Angstrom
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9724 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 88.070, 71.500, 102.780 |
Unit cell angles | 90.00, 100.75, 90.00 |
Refinement procedure
Resolution | 46.130 - 1.390 |
R-factor | 0.1606 |
Rwork | 0.159 |
R-free | 0.19050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xdc |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.130 | 46.130 | 1.430 |
High resolution limit [Å] | 1.390 | 6.220 | 1.390 |
Rmerge | 0.143 | 0.056 | 2.549 |
Rmeas | 0.155 | 0.061 | 2.777 |
Total number of observations | 1678901 | ||
Number of reflections | 251442 | 2942 | 18564 |
<I/σ(I)> | 8.64 | 29.01 | 1 |
Completeness [%] | 99.9 | 99.5 | 99.9 |
Redundancy | 6.677 | 6.266 | 6.292 |
CC(1/2) | 0.997 | 0.997 | 0.454 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 277 | 0.1M Mes-NaOH (pH6.0), 19% PEG4000, 21% glycerol, 0.4M MgCl2 |