8AMP
Crystal structure of M.tuberculosis ferredoxin Fdx
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-28 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.966 |
Spacegroup name | H 3 2 |
Unit cell lengths | 46.959, 46.959, 162.674 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 28.760 - 2.000 |
R-factor | 0.2543 |
Rwork | 0.250 |
R-free | 0.29100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vjw |
RMSD bond length | 0.122 |
RMSD bond angle | 4.414 |
Data reduction software | XDS (20170615) |
Data scaling software | STARANISO (3.344 27-Apr-2022) |
Phasing software | MoRDa (1.4.09; 10.02.2022) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.760 | 28.760 | 2.050 |
High resolution limit [Å] | 2.000 | 8.950 | 2.000 |
Rmeas | 0.097 | 0.051 | 2.801 |
Number of reflections | 4958 | 73 | 346 |
<I/σ(I)> | 10.95 | 36.57 | 0.93 |
Completeness [%] | 99.9 | 96.1 | 100 |
Redundancy | 9.5 | 7.4 | 9.9 |
CC(1/2) | 0.998 | 0.994 | 0.526 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 0.2 M MgCl2, 0.1 M Tris, 25% (w/v) PEG 3350 |