8AMN
Crystal structure of AUGUGGCAU duplex with strontium ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.917143 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 28.102, 90.131, 138.182 |
Unit cell angles | 90.00, 91.39, 90.00 |
Refinement procedure
Resolution | 46.050 - 2.460 |
R-factor | 0.2032 |
Rwork | 0.199 |
R-free | 0.24780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8amg |
RMSD bond length | 0.006 |
RMSD bond angle | 1.085 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.060 | 2.610 |
High resolution limit [Å] | 2.460 | 2.460 |
Rmerge | 0.044 | 0.893 |
Number of reflections | 48753 | 7866 |
<I/σ(I)> | 14.36 | 1.27 |
Completeness [%] | 99.1 | |
Redundancy | 3.5 | |
CC(1/2) | 0.999 | 0.591 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.08 M NaCl 0.02 M BaCl2 0.04 M cacodylate sodium 45% MPD 0.012 M spermine |