8AMK
Crystal structure of AUGUGGCAU duplex crystallized in the presence of calcium ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.917143 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 28.066, 90.160, 137.946 |
Unit cell angles | 90.00, 91.38, 90.00 |
Refinement procedure
Resolution | 45.970 - 2.850 |
R-factor | 0.2111 |
Rwork | 0.208 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8amg |
RMSD bond length | 0.002 |
RMSD bond angle | 0.460 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.970 | 3.020 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmerge | 0.074 | 0.893 |
Number of reflections | 16139 | 2557 |
<I/σ(I)> | 14.48 | |
Completeness [%] | 99.5 | 99.5 |
Redundancy | 6.9 | |
CC(1/2) | 0.999 | 0.766 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.08 M NaCl 0.02 M BaCl2 0.04 M cacodylate sodium 45% MPD 0.012 M spermine |