8AMI
Crystal structure of AUGUGGCAU duplex with barium ions (model 2)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.3 |
| Synchrotron site | BESSY |
| Beamline | 14.3 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2016-08-27 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.895 |
| Spacegroup name | P 43 21 2 |
| Unit cell lengths | 34.109, 34.109, 81.353 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 31.460 - 1.790 |
| R-factor | 0.185 |
| Rwork | 0.182 |
| R-free | 0.23610 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 8amg |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.931 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 31.500 | 1.900 |
| High resolution limit [Å] | 1.790 | 1.790 |
| Rmerge | 0.090 | 0.816 |
| Number of reflections | 8634 | 1386 |
| <I/σ(I)> | 11.49 | 1.89 |
| Completeness [%] | 99.7 | |
| Redundancy | 4.6 | |
| CC(1/2) | 0.998 | 0.720 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 292 | 0.08 M NaCl 0.02 M BaCl2 0.04 M cacodylate sodium 45% MPD 0.012 M spermine |






