8AMI
Crystal structure of AUGUGGCAU duplex with barium ions (model 2)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-27 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.895 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 34.109, 34.109, 81.353 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.460 - 1.790 |
R-factor | 0.185 |
Rwork | 0.182 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8amg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.931 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 31.500 | 1.900 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmerge | 0.090 | 0.816 |
Number of reflections | 8634 | 1386 |
<I/σ(I)> | 11.49 | 1.89 |
Completeness [%] | 99.7 | |
Redundancy | 4.6 | |
CC(1/2) | 0.998 | 0.720 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 292 | 0.08 M NaCl 0.02 M BaCl2 0.04 M cacodylate sodium 45% MPD 0.012 M spermine |