8AMG
Crystal structure of AUGUGGCAU duplex with barium ions (model 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-26 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.895 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 84.014, 84.014, 138.966 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.010 - 2.260 |
R-factor | 0.1934 |
Rwork | 0.191 |
R-free | 0.24040 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 1.062 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | Auto-Rickshaw |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.010 | 2.400 |
High resolution limit [Å] | 2.260 | 2.260 |
Rmerge | 0.062 | 0.702 |
Number of reflections | 25605 | 4153 |
<I/σ(I)> | 14.73 | 1.93 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 3.9 | |
CC(1/2) | 0.999 | 0.619 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 292 | 0.08 M NaCl 0.02 M BaCl2 0.04 M cacodylate sodium 45% MPD 0.012 M spermine |