8AIH
Crystal Structure of Enterococcus faecium Nicotinate Nucleotide Adenylyltransferase at 1.9 Angstroms Resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-03 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 63.650, 64.540, 108.540 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.320 - 1.900 |
R-factor | 0.2384 |
Rwork | 0.236 |
R-free | 0.27870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Homology structure generated by AlphaFold |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | MrBUMP |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.320 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.217 | |
Rmeas | 0.226 | |
Rpim | 0.063 | |
Number of reflections | 17988 | 874 |
<I/σ(I)> | 5.9 | 0.6 |
Completeness [%] | 99.9 | 99.8 |
Redundancy | 12.8 | |
CC(1/2) | 0.996 | 0.283 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 293 | 15 mg/mL EfNNAT in 50 mM HEPES, 150 mM NaCl, 2mM DTT, 0.02% NaN3 at pH 7.2 with the crystallization condition of 0.1 M Tris (pH 8.5), 2.0 M Ammonium sulfate |