8AH7
Crystal Structure of the third PDZ domain of PSD-95 protein in the space group P212121 at pH 4.0
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-09 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.7749 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.562, 36.747, 73.222 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.530 - 1.250 |
R-factor | 0.1625 |
Rwork | 0.161 |
R-free | 0.19760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qji |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.20) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.530 | 19.530 | 1.270 |
High resolution limit [Å] | 1.250 | 6.850 | 1.250 |
Rmerge | 0.045 | 0.041 | 0.883 |
Rmeas | 0.050 | 0.047 | 1.005 |
Rpim | 0.023 | 0.022 | 0.465 |
Total number of observations | 99957 | 552 | 4999 |
Number of reflections | 24458 | 152 | 1205 |
<I/σ(I)> | 8.2 | 24.2 | 1 |
Completeness [%] | 98.4 | 86.5 | 99.6 |
Redundancy | 4.1 | 3.6 | 4.1 |
CC(1/2) | 0.999 | 0.995 | 0.762 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 298 | 30% PEG 4000, 0.2M Ammonium Sulfate, 0.1M sodium acetate |