8AFI
GABARAP in complex with LIR motif of HsATG3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-27 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 62.800, 63.800, 73.900 |
Unit cell angles | 64.50, 86.50, 70.30 |
Refinement procedure
Resolution | 49.100 - 2.660 |
R-factor | 0.217 |
Rwork | 0.215 |
R-free | 0.26180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6hb9 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.216 |
Data reduction software | XDS (1.16_3549) |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.130 | 2.750 |
High resolution limit [Å] | 2.660 | 2.660 |
Rmerge | 0.068 | 1.126 |
Rmeas | 0.081 | |
Rpim | 0.043 | 0.721 |
Number of reflections | 52724 | 2663 |
<I/σ(I)> | 14.19 | 1.02 |
Completeness [%] | 98.1 | |
Redundancy | 3.5 | |
CC(1/2) | 0.998 | 0.481 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | Sodium acetate, sodium cacodylate, PEG 8,000 |