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8AD2

Tobacco lectin Nictaba in complex with triacetylchitotriose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2020-08-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameP 1 21 1
Unit cell lengths66.660, 146.159, 81.908
Unit cell angles90.00, 95.87, 90.00
Refinement procedure
Resolution54.220 - 2.000
R-factor0.1961
Rwork0.196
R-free0.22610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)apo
RMSD bond length0.013
RMSD bond angle1.251
Data reduction softwareXDS (20200131)
Data scaling softwareXDS (20200131)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.3902.120
High resolution limit [Å]2.0002.000
Rmeas0.1321.109
Number of reflections9799811697
<I/σ(I)>8.011.23
Completeness [%]93.469.2
Redundancy4.063.62
CC(1/2)0.9960.510
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5287100 mM ZnAc, 100 mM ZnCl2, 100 mM Bis-Tris pH 7.5, 20 % Medium smear. Soaked and cryoprotected in ML supplemented with 5% (v/v) glycerol, 5% (v/v) ethylene glycol , 5% (v/v) DMSO, 1 mM triacetylchitotriose.

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