8AAV
Human heavy chain ferritin with introduced Cys residues modified with C10 ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-14 |
Detector | DECTRIS EIGER R 4M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 2 3 |
Unit cell lengths | 181.440, 181.440, 181.440 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.540 - 2.000 |
R-factor | 0.1449 |
Rwork | 0.144 |
R-free | 0.17700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jkk |
RMSD bond length | 0.012 |
RMSD bond angle | 1.675 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.540 | 48.410 | 2.030 |
High resolution limit [Å] | 2.000 | 10.960 | 2.000 |
Rmerge | 0.052 | 0.039 | 0.181 |
Rmeas | 0.054 | 0.040 | 0.186 |
Rpim | 0.012 | 0.009 | 0.041 |
Total number of observations | 16598 | 131455 | |
Number of reflections | 132696 | 891 | 6497 |
<I/σ(I)> | 43.2 | 61.3 | 16 |
Completeness [%] | 99.9 | 99 | 98.5 |
Redundancy | 20.9 | 18.6 | 20.2 |
CC(1/2) | 1.000 | 0.999 | 0.995 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | Crystallization of little amounts of protein or functionalized protein variants were performed via hanging drop vapor diffusion techniques. Reservoir solution (100 mM Tris, 500 mM MgOAc, pH 8.5) was prepared in a 24- well manual plate set. Drops were prepared on siliconized glass cover slides (Jena Bioscience) by mixing 2 microL reservoir solutions with 1 microL 50 mM Tris, 1 M NaCl, pH 7.5 buffer and 1 microL of respective ferritin variant. Plates were incubated at 298K. After one day first crystals were visible. |