8AAQ
Crystal structure of the carotenoid-binding protein domain from silkworm Bombyx mori (BmCBP), CRT-416 form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-19 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54184 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 62.119, 66.445, 120.262 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.130 - 1.800 |
R-factor | 0.1944 |
Rwork | 0.193 |
R-free | 0.23090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ztq |
RMSD bond length | 0.018 |
RMSD bond angle | 2.544 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.130 | 60.130 | 1.840 |
High resolution limit [Å] | 1.800 | 8.990 | 1.800 |
Rmerge | 0.083 | 0.027 | 0.909 |
Rmeas | 0.090 | 0.031 | 1.023 |
Rpim | 0.033 | 0.015 | 0.451 |
Total number of observations | 170679 | 760 | 4487 |
Number of reflections | 22589 | 203 | 981 |
<I/σ(I)> | 17.1 | 35.3 | 1.6 |
Completeness [%] | 96.0 | 92.1 | 71.2 |
Redundancy | 7.6 | 3.7 | 4.6 |
CC(1/2) | 0.991 | 0.999 | 0.519 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 288 | 0.5 M Sodium citrate tribasic dihydrate, 0.1 M BIS-TRIS propane pH 7.0 |