8AAO
Crystal structure of the PDZ tandem of syntenin in complex with compound 95
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.972423 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 102.206, 48.257, 74.942 |
Unit cell angles | 90.00, 120.55, 90.00 |
Refinement procedure
Resolution | 44.010 - 2.469 |
R-factor | 0.2063 |
Rwork | 0.203 |
R-free | 0.27920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1n99 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.050 |
Data reduction software | autoPROC |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (11-DEC-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.010 | 2.557 |
High resolution limit [Å] | 2.469 | 2.469 |
Rmerge | 0.055 | 0.663 |
Rpim | 0.026 | 0.305 |
Number of reflections | 9873 | 1149 |
<I/σ(I)> | 17.69 | |
Completeness [%] | 85.7 | |
Redundancy | 5.4 | |
CC(1/2) | 0.999 | 0.767 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100mM sodium acetate 200mM ammonium acetate 20% PEG 3350 |