Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8A25

Lysophospholipase PlaA from Legionella pneumophila str. Corby - complex with PEG fragment

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-22
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.3778
Spacegroup nameP 31 2 1
Unit cell lengths82.238, 82.238, 68.447
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution71.220 - 1.730
R-factor0.159
Rwork0.158
R-free0.18330
Structure solution methodFOURIER SYNTHESIS
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]71.22071.2201.830
High resolution limit [Å]1.7305.4801.730
Rmerge0.0640.0251.192
Rmeas0.0650.0251.223
Rpim0.0150.0060.274
Total number of observations5190711883280436
Number of reflections271029854089
<I/σ(I)>28.699.42.5
Completeness [%]95.999.9100
Redundancy19.219.119.7
CC(1/2)1.0001.0000.833
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529214.7% (w/v) PEG3350, 1% (w/v) PEG 1K, 0.5% (w/v) PEG200, 8.9% (v/v) Tacsimate pH 5, 200 mM NH4I, 1 mM CaCl2 and 1 mM MgCl2; cryoprotection and iodide soaking for iodide-SAD: 10% (v/v) (2R,3R)-(-)-2,3-butandiole, 16% (w/v) PEG3350, 6% (v/v) Tacsimate pH 5, 200 mM NH4I

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon