7ZGM
Plant N-glycan specific alpha-1,3-mannosidase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97950 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.941, 84.335, 132.581 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 66.290 - 1.430 |
Rwork | 0.133 |
R-free | 0.17250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2wvx |
RMSD bond length | 0.011 |
RMSD bond angle | 1.225 |
Data reduction software | xia2 |
Data scaling software | pointless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0326) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.290 | 66.290 | 1.450 |
High resolution limit [Å] | 1.430 | 7.830 | 1.430 |
Rmerge | 0.082 | 0.034 | 1.196 |
Rmeas | 0.095 | 0.039 | 1.444 |
Rpim | 0.048 | 0.020 | 0.794 |
Number of reflections | 135130 | 135130 | 6477 |
<I/σ(I)> | 9.7 | ||
Completeness [%] | 98.8 | ||
Redundancy | 7.1 | 6.3 | 5.9 |
CC(1/2) | 0.998 | 0.994 | 0.502 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 200 mM Potassium citrate and 20% w/v PEG 3350 |