7Z6U
Pim1 in complex with (E)-4-((6-amino-2-oxoindolin-3-ylidene)methyl)benzoic acid and Pimtide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 65 |
Unit cell lengths | 97.797, 97.797, 80.067 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.190 - 2.280 |
R-factor | 0.1632 |
Rwork | 0.162 |
R-free | 0.19080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ndt |
RMSD bond length | 0.008 |
RMSD bond angle | 0.805 |
Data reduction software | XDS (1.02) |
Data scaling software | XDS (1.02) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.899 | 2.410 |
High resolution limit [Å] | 2.280 | 2.280 |
Number of reflections | 19985 | 3159 |
<I/σ(I)> | 27.9 | 5.28 |
Completeness [%] | 99.8 | 98.9 |
Redundancy | 11.4 | 11.6 |
CC(1/2) | 1.000 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291.15 | 100 mM bis-tris-propane (pH 7.0), 10% ethylene glycol, 0.3% DMSO, 20% PEG3350, 200 mM MgOAc |