7Z4X
Crystal structure of Variovorax paradoxus indole monooxygenase (VpIndA1) in complex with FAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 94.512, 94.512, 111.253 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.410 - 2.050 |
R-factor | 0.1762 |
Rwork | 0.174 |
R-free | 0.21280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | robetta_prediction |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.260 | 47.260 | 2.100 |
High resolution limit [Å] | 2.050 | 8.930 | 2.050 |
Rmerge | 0.125 | 0.035 | 2.191 |
Rmeas | 0.131 | 0.037 | 2.299 |
Rpim | 0.039 | 0.012 | 0.691 |
Total number of observations | 401701 | 4644 | 29493 |
Number of reflections | 36562 | 518 | 2727 |
<I/σ(I)> | 13.7 | 50 | 1.4 |
Completeness [%] | 99.7 | 99.5 | 96.9 |
Redundancy | 11 | 9 | 10.8 |
CC(1/2) | 0.999 | 0.999 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 100 mM Na-acetate pH 5, 1400 mM Na-malonate, 1 mM FAD |