7Z0J
human PEX13 SH3 domain in complex with internal FxxxF motif
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-24 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.000029 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 86.808, 86.808, 65.436 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.410 - 2.300 |
R-factor | 0.1875 |
Rwork | 0.185 |
R-free | 0.22780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7z0i |
RMSD bond length | 0.008 |
RMSD bond angle | 1.525 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.410 | 49.410 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.200 | 0.049 | |
Rmeas | 0.296 | ||
Rpim | 0.091 | 0.011 | 0.558 |
Number of reflections | 12998 | 262 | 1250 |
<I/σ(I)> | 11.8 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 20 | ||
CC(1/2) | 0.997 | 0.999 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2 M Sodium chloride 0.1 M Bis-Tris pH 6.5 25% (w/v) PEG 3350 |