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7YVY

Crystal structure of thiolase PFC_04095 from Pyrococcus furiosus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2018-12-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0723
Spacegroup nameC 1 2 1
Unit cell lengths133.246, 113.482, 107.533
Unit cell angles90.00, 123.03, 90.00
Refinement procedure
Resolution48.030 - 2.700
R-factor0.2114
Rwork0.209
R-free0.25240
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6esq
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0302.797
High resolution limit [Å]2.7002.700
Number of reflections367973666
<I/σ(I)>16.93
Completeness [%]99.2
Redundancy6.7
CC(1/2)0.9980.923
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52980.1 M carboxylic acids, 0.1 M buffer system 3 pH 8.5 and 50 % v/v precipitant mix 4. Carboxylic acids: 0.2 M each of sodium formate, ammonium acetate, sodium citrate tribasic dihydrate, sodium potassium tartrate tetrahydrate and sodium oxamate. Buffer system 3: Tris (base); bicine pH 8.5 Precipitant mix 4: MPD_PIK_P3350 (25 % v/v MPD, 25 % PEG 1000, 25 % w/v PEG 3350)

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PDB entries from 2024-05-15

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