7YVR
Crystal Structure of L-Threonine Aldolase from Neptunomonas marina
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 264.430, 59.859, 95.112 |
Unit cell angles | 90.00, 106.09, 90.00 |
Refinement procedure
Resolution | 19.820 - 2.800 |
R-factor | 0.2034 |
Rwork | 0.201 |
R-free | 0.24040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5vye |
RMSD bond length | 0.001 |
RMSD bond angle | 0.402 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.820 | 2.898 |
High resolution limit [Å] | 2.798 | 2.798 |
Number of reflections | 35454 | 15522 |
<I/σ(I)> | 7.65 | |
Completeness [%] | 99.0 | |
Redundancy | 4.5 | |
CC(1/2) | 0.984 | 0.819 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 21%(v/v) MPD, 0.02M Calcium chloride dihydrate, and 0.1M Sodium acetate at pH4.65 |