7YT9
crystal structure of AGD1-4 of Arabidopsis AGDP3
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-12-13 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.9789 |
| Spacegroup name | I 21 21 21 |
| Unit cell lengths | 78.538, 129.205, 167.049 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 47.810 - 2.600 |
| R-factor | 0.2461 |
| Rwork | 0.245 |
| R-free | 0.27220 |
| Structure solution method | SAD |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.690 |
| High resolution limit [Å] | 2.600 | 5.600 | 2.600 |
| Rmerge | 0.039 | 0.024 | 0.705 |
| Rmeas | 0.045 | 0.028 | 0.798 |
| Rpim | 0.021 | 0.013 | 0.368 |
| Total number of observations | 116578 | ||
| Number of reflections | 26390 | 2751 | 2611 |
| <I/σ(I)> | 10.6 | ||
| Completeness [%] | 99.2 | 98.1 | 99.7 |
| Redundancy | 4.4 | 4.3 | 4.5 |
| CC(1/2) | 0.999 | 0.834 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M lithium sulfate, 20% PEG1000 and 0.1M sodium citrate, pH 5.5 |






