7YT9
crystal structure of AGD1-4 of Arabidopsis AGDP3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-13 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 78.538, 129.205, 167.049 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.810 - 2.600 |
R-factor | 0.2461 |
Rwork | 0.245 |
R-free | 0.27220 |
Structure solution method | SAD |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.690 |
High resolution limit [Å] | 2.600 | 5.600 | 2.600 |
Rmerge | 0.039 | 0.024 | 0.705 |
Rmeas | 0.045 | 0.028 | 0.798 |
Rpim | 0.021 | 0.013 | 0.368 |
Total number of observations | 116578 | ||
Number of reflections | 26390 | 2751 | 2611 |
<I/σ(I)> | 10.6 | ||
Completeness [%] | 99.2 | 98.1 | 99.7 |
Redundancy | 4.4 | 4.3 | 4.5 |
CC(1/2) | 0.999 | 0.834 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1 M lithium sulfate, 20% PEG1000 and 0.1M sodium citrate, pH 5.5 |