7YRK
Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 78.671, 78.671, 37.203 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.180 - 0.920 |
R-factor | 0.1142 |
Rwork | 0.113 |
R-free | 0.12840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lyt |
RMSD bond length | 0.011 |
RMSD bond angle | 1.152 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | REFMAC |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.180 | 0.940 |
High resolution limit [Å] | 0.920 | 0.920 |
Rmerge | 0.084 | 0.568 |
Number of reflections | 78748 | 2783 |
<I/σ(I)> | 17 | |
Completeness [%] | 98.2 | |
Redundancy | 11.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M of acetic acid-sodium acetate buffer (pH 4.7) including 2-6 % (m/v) of NaCl |