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7YRK

Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-17A
Synchrotron sitePhoton Factory
BeamlineBL-17A
Temperature [K]100
Detector technologyPIXEL
Collection date2020-03-05
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.98
Spacegroup nameP 43 21 2
Unit cell lengths78.671, 78.671, 37.203
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution35.180 - 0.920
R-factor0.1142
Rwork0.113
R-free0.12840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5lyt
RMSD bond length0.011
RMSD bond angle1.152
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareREFMAC
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.1800.940
High resolution limit [Å]0.9200.920
Rmerge0.0840.568
Number of reflections787482783
<I/σ(I)>17
Completeness [%]98.2
Redundancy11.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2770.1 M of acetic acid-sodium acetate buffer (pH 4.7) including 2-6 % (m/v) of NaCl

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PDB entries from 2024-05-15

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